Functional Bioinformatics Internship Course
About Course
Course Content
Segment 1: Bioinformatics Databases
-
Introduction to NCBI
18:02 -
Sequence Retrieval
16:17 -
Sequence Analysis
17:59 -
PubMed Central & ENTREZ
11:07 -
FASTA vs GenBank
18:26 -
Gene
30:21 -
GenBank
06:50 -
Assembly & NCBI Genome
36:14 -
Genome Reference Consortium (GRC)
07:48 -
BioProject
06:40 -
BioSystems
04:16 -
BioSample
02:56 -
Sequence Read Archive (SRA)
07:15 -
Introduction to UCSC Genome Browser & SARS-CoV-2 Viral Genome
13:40 -
Retrieve an Entire Genome & Retrieval of SARS-CoV-2 Viral Genome
09:41 -
Table Browser & SARS-CoV-2 Viral Genome
12:16 -
Retrieval of Genomic Data & Annotation of SARS-CoV-2 Viral Genome
05:30 -
Visualization of Genomic Data on the Genome Browser & SARS-CoV-2 Genome
10:51 -
Introduction to ENSEMBL
07:50 -
Retrieval of a Gene-Protein-Chromosomal Region
18:02 -
Gene Analysis & Annotation
34:40 -
Genome Assembly Retrieval and Analysis
10:24 -
Comparative Genomics Analysis
05:35 -
Database of Short Genetic Variations (dbSNP)
12:16 -
Database of Genomic Structural Variation (dbVar)
06:25 -
Variation
24:37 -
NCBI BLAST Database Searching
25:37 -
BLAST/BLAT
15:08 -
HomoloGene (Gene and Protein Families)
06:11 -
RefSeq Database
11:16 -
Taxonomy
09:57 -
Introduction to UniProt
09:56 -
UniProtKB & Protein Analysis
39:30 -
Introduction to Protein Data Bank (PDB)
06:45 -
Introduction to Molecular Modeling Database
08:07 -
UniProteome & Retreieval of an Entire Proteome
13:05 -
UniRef & Retrieve Protein Clusters
11:36 -
UniParc & Find the Non-Redundant Entries
04:59 -
Introduction to InterPro
04:10 -
Protein & Protein Domain Analysis
09:29 -
InterPro – Protein Family Classification and Analysis
14:35 -
Peptide Search: Searching for a Particular Peptide on UniProt
03:15 -
Uniprot Align Pairwise And Multiple Sequence Alignment And Annotation
03:48 -
Accurately Searching for a Protein Structure on PDB & Protein Analysis
13:56 -
Browsing PDB According to Annotation
06:52 -
Digging Out Categorized & Specific Protein Structures from PDB Archives
06:23 -
3D Structure Visualization on PDB
10:49 -
Biological Annotation and Protein Features View & Analysis
08:18 -
Genomic Discovery of Protein Structure Through Gene
04:07 -
Mapping Genomic Position to Protein Sequence and 3D Structure
04:35 -
Alignment Between Two PDB Sequences & Structures
06:08 -
Ligands
05:23 -
Protein Symmetry: Understanding the Protein Validation
02:34 -
Introduction to Phytozome
09:39 -
Interpret Plant Genome Records
09:07 -
Keyword or BLAST Search in a Plant Genome
15:58 -
Visualize a Plant Genome using JBrowse
17:38 -
Download an Entire Plant Genome & Proteome
26:41 -
Introduction to Gene Expression Omnibus Database
09:16 -
Gene Expression Omnibus (GEO) Platforms
05:42 -
Gene Expression Omnibus (GEO) Samples
04:16 -
Gene Expression Omnibus (GEO) Datasets
04:45 -
Gene Expression Omnibus (GEO) Series
04:01 -
Regulation
04:19 -
UniProt BLAST & Protein Database Searching
12:33 -
ID Mapping & Making Analysis Easier
07:17 -
PROSITE
13:46 -
Pfam: Understanding Protein Families and their Members
15:56 -
STRING: Protein-Protein Network Database and Analyzing PPI Between Proteins
13:17
Segment 2: Understanding Bioinformatics
Segment 3: Sequence and Biological Data Analysis
Segment 4: Predictive Bioinformatics
Segment 5: Bioinformatics Scripting in Linux, Python and R
Functional Bioinformatics Analysis & High-Throughput Genomics Data Analysis
Evaluation
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